Output table descriptionΒΆ

Column name

Description

id

transcript or gene id

position

transcript or gene position

kmer

5-mer where modified base sits in the middle if modified

diff_mod_rate_<condition1>_vs_<condition2>

differential modification rate between condition1 and condition2 (modification rate of condition1 - modification rate of condition2)

z_score_<condition1>_vs_<condition2>

z score obtained from z-test of the differential modification rate

pval_<condition1>_vs_<condition2>

significance level from z-test of the differential modification rate

mod_rate_<condition>-<replicate>

modification rate of a replicate in the condition

mu_unmod

inferred mean of the unmodified RNAs distribution

mu_mod

inferred mean of the modified RNAs distribution

sigma2_unmod

inferred sigma^2 of the unmodified RNAs distribution

sigma2_mod

inferred sigma^2 of the modified RNAs distribution

conf_mu_unmod

confidence level of mu_unmod compared to the unmodified reference signal

conf_mu_mod

confidence level of mu_unmod compared to the unmodified reference signal

mod_assignment

lower if mu_mod < mu_unmod and higher if mu_mod > mu_unmod